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Lutetium in PDB 4xha: Crystal Structure of Thosea Asigna Virus Rna-Dependent Rna Polymerase (Rdrp) Complexed with LU3+

Protein crystallography data

The structure of Crystal Structure of Thosea Asigna Virus Rna-Dependent Rna Polymerase (Rdrp) Complexed with LU3+, PDB code: 4xha was solved by D.S.Ferrero, M.Buxaderas, J.F.Rodriguez, N.Verdaguer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 63.52 / 3.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 154.050, 224.570, 128.290, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 24.4

Lutetium Binding Sites:

The binding sites of Lutetium atom in the Crystal Structure of Thosea Asigna Virus Rna-Dependent Rna Polymerase (Rdrp) Complexed with LU3+ (pdb code 4xha). This binding sites where shown within 5.0 Angstroms radius around Lutetium atom.
In total 2 binding sites of Lutetium where determined in the Crystal Structure of Thosea Asigna Virus Rna-Dependent Rna Polymerase (Rdrp) Complexed with LU3+, PDB code: 4xha:
Jump to Lutetium binding site number: 1; 2;

Lutetium binding site 1 out of 2 in 4xha

Go back to Lutetium Binding Sites List in 4xha
Lutetium binding site 1 out of 2 in the Crystal Structure of Thosea Asigna Virus Rna-Dependent Rna Polymerase (Rdrp) Complexed with LU3+


Mono view


Stereo pair view

A full contact list of Lutetium with other atoms in the Lu binding site number 1 of Crystal Structure of Thosea Asigna Virus Rna-Dependent Rna Polymerase (Rdrp) Complexed with LU3+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Lu701

b:0.8
occ:1.00
OD2 A:ASP140 3.2 95.7 1.0
OD1 A:ASP140 3.4 98.0 1.0
CG A:ASP140 3.7 79.6 1.0
OD2 A:ASP142 4.4 81.7 1.0

Lutetium binding site 2 out of 2 in 4xha

Go back to Lutetium Binding Sites List in 4xha
Lutetium binding site 2 out of 2 in the Crystal Structure of Thosea Asigna Virus Rna-Dependent Rna Polymerase (Rdrp) Complexed with LU3+


Mono view


Stereo pair view

A full contact list of Lutetium with other atoms in the Lu binding site number 2 of Crystal Structure of Thosea Asigna Virus Rna-Dependent Rna Polymerase (Rdrp) Complexed with LU3+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Lu701

b:0.1
occ:1.00
OD2 B:ASP142 2.4 0.4 1.0
CG B:ASP142 3.2 96.3 1.0
OD1 B:ASP142 3.5 0.3 1.0
OD1 B:ASP140 3.7 0.6 1.0
CG B:ASP140 3.8 0.8 1.0
OD2 B:ASP140 4.1 0.6 1.0
CB B:ASP140 4.2 0.8 1.0
CB B:ASP142 4.4 50.4 1.0
N B:ASP142 5.0 33.4 1.0

Reference:

D.S.Ferrero, M.Buxaderas, J.F.Rodriguez, N.Verdaguer. The Structure of the Rna-Dependent Rna Polymerase of A Permutotetravirus Suggests A Link Between Primer-Dependent and Primer-Independent Polymerases. Plos Pathog. V. 11 05265 2015.
ISSN: ESSN 1553-7374
PubMed: 26625123
DOI: 10.1371/JOURNAL.PPAT.1005265
Page generated: Mon Dec 14 03:21:24 2020

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