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Lutetium in PDB 4ja3: Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli

Protein crystallography data

The structure of Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli, PDB code: 4ja3 was solved by E.M.Quistgaard, C.Low, P.Moberg, L.Tresaugues, P.Nordlund, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.26 / 3.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 246.880, 74.380, 131.110, 90.00, 117.71, 90.00
R / Rfree (%) 28.5 / 31.5

Other elements in 4ja3:

The structure of Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli also contains other interesting chemical elements:

Cadmium (Cd) 1 atom

Lutetium Binding Sites:

The binding sites of Lutetium atom in the Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli (pdb code 4ja3). This binding sites where shown within 5.0 Angstroms radius around Lutetium atom.
In total 4 binding sites of Lutetium where determined in the Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli, PDB code: 4ja3:
Jump to Lutetium binding site number: 1; 2; 3; 4;

Lutetium binding site 1 out of 4 in 4ja3

Go back to Lutetium Binding Sites List in 4ja3
Lutetium binding site 1 out of 4 in the Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli


Mono view


Stereo pair view

A full contact list of Lutetium with other atoms in the Lu binding site number 1 of Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Lu502

b:0.0
occ:1.00
OE1 A:GLU237 3.9 0.8 1.0
LU A:LU503 3.9 0.7 1.0
OE1 A:GLN233 3.9 0.6 1.0
CG A:GLN233 4.5 0.0 1.0
CD A:GLN233 4.5 0.2 1.0
CG A:GLU234 4.6 0.7 1.0
OE2 A:GLU234 4.7 0.3 1.0
CD A:GLU237 4.9 0.6 1.0

Lutetium binding site 2 out of 4 in 4ja3

Go back to Lutetium Binding Sites List in 4ja3
Lutetium binding site 2 out of 4 in the Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli


Mono view


Stereo pair view

A full contact list of Lutetium with other atoms in the Lu binding site number 2 of Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Lu503

b:0.7
occ:1.00
OE2 A:GLU237 3.4 0.4 1.0
CD A:GLU237 3.5 0.6 1.0
OE1 A:GLU237 3.6 0.8 1.0
LU A:LU502 3.9 0.0 1.0
CG A:GLU237 4.3 0.8 1.0

Lutetium binding site 3 out of 4 in 4ja3

Go back to Lutetium Binding Sites List in 4ja3
Lutetium binding site 3 out of 4 in the Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli


Mono view


Stereo pair view

A full contact list of Lutetium with other atoms in the Lu binding site number 3 of Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Lu501

b:0.0
occ:1.00
OE2 B:GLU237 2.5 0.5 1.0
CD B:GLU237 3.6 0.1 1.0
OG1 B:THR250 4.2 0.7 1.0
OE1 B:GLU237 4.3 0.2 1.0
CG B:GLU237 4.5 0.9 1.0
CG2 B:THR250 4.5 0.2 1.0
LU B:LU502 4.5 0.0 1.0
CB B:THR250 4.9 0.7 1.0
CB B:GLU237 4.9 0.8 1.0

Lutetium binding site 4 out of 4 in 4ja3

Go back to Lutetium Binding Sites List in 4ja3
Lutetium binding site 4 out of 4 in the Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli


Mono view


Stereo pair view

A full contact list of Lutetium with other atoms in the Lu binding site number 4 of Partially Occluded Inward Open Conformation of the Xylose Transporter Xyle From E. Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Lu502

b:0.0
occ:1.00
OE1 B:GLN233 3.8 0.9 1.0
CG B:GLU234 4.3 0.8 1.0
CD B:GLN233 4.4 0.8 1.0
CG B:GLN233 4.4 0.5 1.0
LU B:LU501 4.5 0.0 1.0
OE1 B:GLU237 4.8 0.2 1.0
OE2 B:GLU234 4.9 1.0 1.0
CB B:GLN233 5.0 1.0 1.0

Reference:

E.M.Quistgaard, C.Low, P.Moberg, L.Tresaugues, P.Nordlund. Structural Basis For Substrate Transport in the Glut-Homology Family of Monosaccharide Transporters. Nat.Struct.Mol.Biol. V. 20 766 2013.
ISSN: ISSN 1545-9993
PubMed: 23624861
DOI: 10.1038/NSMB.2569
Page generated: Mon Dec 14 03:21:22 2020

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