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Lutetium in PDB 1plu: Pectate Lyase C From Erwinia Chrysanthemi with 1 Lu+3 Ion in the Putative Calcium Binding Site

Enzymatic activity of Pectate Lyase C From Erwinia Chrysanthemi with 1 Lu+3 Ion in the Putative Calcium Binding Site

All present enzymatic activity of Pectate Lyase C From Erwinia Chrysanthemi with 1 Lu+3 Ion in the Putative Calcium Binding Site:
4.2.2.2;

Protein crystallography data

The structure of Pectate Lyase C From Erwinia Chrysanthemi with 1 Lu+3 Ion in the Putative Calcium Binding Site, PDB code: 1plu was solved by M.D.Yoder, F.A.Jurnak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.600, 80.600, 95.700, 90.00, 90.00, 90.00
R / Rfree (%) 22.1 / n/a

Lutetium Binding Sites:

The binding sites of Lutetium atom in the Pectate Lyase C From Erwinia Chrysanthemi with 1 Lu+3 Ion in the Putative Calcium Binding Site (pdb code 1plu). This binding sites where shown within 5.0 Angstroms radius around Lutetium atom.
In total only one binding site of Lutetium was determined in the Pectate Lyase C From Erwinia Chrysanthemi with 1 Lu+3 Ion in the Putative Calcium Binding Site, PDB code: 1plu:

Lutetium binding site 1 out of 1 in 1plu

Go back to Lutetium Binding Sites List in 1plu
Lutetium binding site 1 out of 1 in the Pectate Lyase C From Erwinia Chrysanthemi with 1 Lu+3 Ion in the Putative Calcium Binding Site


Mono view


Stereo pair view

A full contact list of Lutetium with other atoms in the Lu binding site number 1 of Pectate Lyase C From Erwinia Chrysanthemi with 1 Lu+3 Ion in the Putative Calcium Binding Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Lu700

b:15.2
occ:1.00
 OD2 A:ASP170 2.2 14.2 1.0
OD2 A:ASP131 2.2 15.1 1.0
OD1 A:ASP131 2.3 15.5 1.0
OD1 A:ASP129 2.3 19.7 1.0
OE1 A:GLU166 2.3 20.2 1.0
CG A:ASP131 2.6 14.9 1.0
CG A:ASP170 3.4 13.6 1.0
CD A:GLU166 3.4 20.3 1.0
CG A:ASP129 3.5 19.4 1.0
OD2 A:ASP129 4.0 20.0 1.0
CG A:GLU166 4.1 19.9 1.0
CB A:ASP131 4.1 15.5 1.0
CB A:ASP170 4.2 13.6 1.0
OG A:SER167 4.2 15.7 1.0
OD1 A:ASP170 4.3 14.2 1.0
OE2 A:GLU166 4.4 20.9 1.0
CB A:SER167 4.5 16.3 1.0
CB A:GLU166 4.6 19.4 1.0
N A:SER167 4.7 17.9 1.0
CB A:ASP129 4.7 19.1 1.0
CD A:ARG134 4.8 18.1 1.0
O A:ASP129 4.8 18.0 1.0
CA A:ASP129 4.8 18.1 1.0
CA A:ASP131 4.9 16.1 1.0

Reference:

M.D.Yoder, F.Jurnak. The Refined Three-Dimensional Structure of Pectate Lyase C From Erwinia Chrysanthemi at 2.2 Angstrom Resolution (Implications For An Enzymatic Mechanism). Plant Physiol. V. 107 349 1995.
ISSN: ISSN 0032-0889
PubMed: 12228363
Page generated: Mon Dec 14 03:19:39 2020

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