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Lutetium in PDB 1khv: Crystal Structure of Rabbit Hemorrhagic Disease Virus Rna-Dependent Rna Polymerase Complexed with LU3+

Enzymatic activity of Crystal Structure of Rabbit Hemorrhagic Disease Virus Rna-Dependent Rna Polymerase Complexed with LU3+

All present enzymatic activity of Crystal Structure of Rabbit Hemorrhagic Disease Virus Rna-Dependent Rna Polymerase Complexed with LU3+:
2.7.7.48;

Protein crystallography data

The structure of Crystal Structure of Rabbit Hemorrhagic Disease Virus Rna-Dependent Rna Polymerase Complexed with LU3+, PDB code: 1khv was solved by K.K.Ng, M.M.Cherney, A.L.Vazquez, A.Machin, J.M.Alonso, F.Parra, M.N.James, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.50 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.300, 119.100, 158.700, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 26.5

Lutetium Binding Sites:

The binding sites of Lutetium atom in the Crystal Structure of Rabbit Hemorrhagic Disease Virus Rna-Dependent Rna Polymerase Complexed with LU3+ (pdb code 1khv). This binding sites where shown within 5.0 Angstroms radius around Lutetium atom.
In total 2 binding sites of Lutetium where determined in the Crystal Structure of Rabbit Hemorrhagic Disease Virus Rna-Dependent Rna Polymerase Complexed with LU3+, PDB code: 1khv:
Jump to Lutetium binding site number: 1; 2;

Lutetium binding site 1 out of 2 in 1khv

Go back to Lutetium Binding Sites List in 1khv
Lutetium binding site 1 out of 2 in the Crystal Structure of Rabbit Hemorrhagic Disease Virus Rna-Dependent Rna Polymerase Complexed with LU3+


Mono view


Stereo pair view

A full contact list of Lutetium with other atoms in the Lu binding site number 1 of Crystal Structure of Rabbit Hemorrhagic Disease Virus Rna-Dependent Rna Polymerase Complexed with LU3+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Lu517

b:60.3
occ:0.20
OD2 A:ASP250 2.3 58.1 1.0
OD1 A:ASP250 2.7 59.1 1.0
CG A:ASP250 2.9 53.7 1.0
CE A:LYS403 3.9 48.1 1.0
NZ A:LYS403 4.0 49.6 1.0
CB A:ASP250 4.4 44.1 1.0
OD1 A:ASP354 4.5 37.5 1.0
OD2 A:ASP354 5.0 38.0 1.0

Lutetium binding site 2 out of 2 in 1khv

Go back to Lutetium Binding Sites List in 1khv
Lutetium binding site 2 out of 2 in the Crystal Structure of Rabbit Hemorrhagic Disease Virus Rna-Dependent Rna Polymerase Complexed with LU3+


Mono view


Stereo pair view

A full contact list of Lutetium with other atoms in the Lu binding site number 2 of Crystal Structure of Rabbit Hemorrhagic Disease Virus Rna-Dependent Rna Polymerase Complexed with LU3+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Lu517

b:55.4
occ:0.20
OD1 B:ASP355 2.3 37.1 1.0
O B:LEU249 2.7 26.2 1.0
CG B:ASP355 3.3 33.6 1.0
O B:GLY356 3.4 28.2 1.0
C B:LEU249 3.8 27.6 1.0
OD2 B:ASP355 3.8 36.4 1.0
N B:GLY356 3.8 30.3 1.0
OD1 B:ASP250 4.0 38.6 1.0
N B:LEU249 4.3 25.8 1.0
CA B:ASP355 4.3 27.9 1.0
CB B:ALA385 4.3 36.8 1.0
CB B:ASP355 4.4 30.5 1.0
C B:GLY356 4.4 29.1 1.0
C B:ASP355 4.6 28.9 1.0
O B:SER400 4.6 24.8 1.0
N B:ASP250 4.7 29.6 1.0
CA B:LEU249 4.7 25.6 1.0
OG B:SER400 4.7 30.2 1.0
CA B:GLY356 4.7 29.2 1.0
CA B:ASP250 4.8 31.3 1.0
C B:CYS248 4.8 24.0 1.0
CB B:CYS248 5.0 22.5 1.0

Reference:

K.K.Ng, M.M.Cherney, A.L.Vazquez, A.Machin, J.M.Alonso, F.Parra, M.N.James. Crystal Structures of Active and Inactive Conformations of A Caliciviral Rna-Dependent Rna Polymerase. J.Biol.Chem. V. 277 1381 2002.
ISSN: ISSN 0021-9258
PubMed: 11677245
DOI: 10.1074/JBC.M109261200
Page generated: Mon Dec 14 03:17:56 2020

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